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CaviesPro
4
Dr. Klaus Gruen
Breeding Database for Guinea Pigs / Cavies (Cavia aperea). Administration of pedigrees, housing/cages...
calculates colors and
genotypes
. Reports and Statistics...and Export of the
Data
. AddOns: KNChart
Bio-Rad CFX Manager
1,587
Bio-Rad Laboratories, Inc.
Bio-Rad CFX Manager is a program designed for an intuitive experiment setup...
experiment setup and
data
...
data
analysis for gene expression and SNP
genotyping
HaploView
free
763
Daly Lab
This program is designed to simplify and expedite the process of haplotype analysis by providing...
automatic download of phased
genotype
data
from HapMap. * visualization
Plink
free
19
Sputnik Games
PLINK is a free, open-source whole genome association analysis toolset, designed to perform a range...
on analysis of
genotype
/phenotype
data
...generating
genotype
or CNV calls from raw
data
)
ChromasPro
1,387
Technelysium Pty Ltd
ChromasPro is suitable for DNA sequence assembly projects up to a few megabases...
is able to assemble
data
from Sanger sequencers such
NeEstimator
free
10
Queensland Government, Department of Primary Industries and Fisheries, Australia
The user can estimate Ne using any of the three internal methods or three third...
) from allele frequency
data
...third-party programs.
Genotypes
from a sample
Geneious
2,083
Biomatters Ltd.
Geneious is a research tool designed for biologists and not computer...
data
. Powerful SNP detection and variant calling. Streamlined microsatellite
genotyping
TaqMan Genotyper Software
free
99
Life Technologies Corporation
TaqMan Genotyper Software is a free SNP genotyping...
a free SNP
genotyping
data
...plates, and OpenArray
Genotyping
Plates. It gives
Genotyping Console
free
57
Affymetrix
Genotyping Console is available for analysis of Genome-Wide Human SNP Array...
Genotyping
Console...nucleotide polymorphism (SNP)
genotyping
, indel detection, copy
DIVA-GIS Annapurna
free
27
International Potato Center (CIP)
DIVA-GIS can be used to map and analyze biological distribution data, such as can be provided...
Typically, the distribution
data
...species, phenotypes or
genotypes
GGT
free
282
ggt
GGT stands for Graphical GenoTypes. A graphical representation of molecular marker...
GenoTypes
. A graphical representation of molecular marker
data
...of molecular marker
data
by simple
DETSEX
free
26
INRA
DETSEX is a program that implements a Bayesian model-based classifier to assign markers to their chromosome type...
of individuals from
genotyping
data
. The DetSex...population(s) and the
genotyping
GenoProfiler
free
2
UC Davis/USDA-ARS-WRRC-GGD
GenoProfiler is a cross-platform software package for the fully automated processing...
processing of fingerprinting
data
...purposes (such as
genotyping
for phynogenetic
SPAGeDi
free
17
Olivier Hardy and Xavier Vekemans
SPAGeDi is a computer package primarily designed to characterize the spatial genetic...
mapped populations using
genotype
data
of any ploidy...can also treat
data
without spatial
Breeding Management System
free
79
iPlant Collaborative
Breeding Management System is a suite of interconnected software specifically...
breeding plan development,
data
analysis,
genotyping
and breeding decision support
Flapjack
free
135
SCRI
New software tools for graphical genotyping and haplotype visualization are required...
graphical
genotyping
and haplotype...
data
volumes generated by high throughput SNP and comparable
genotyping
EcoStudy
free
99
Illumina
EcoStudy is a powerful data analysis component of Eco. EcoStudy enables you to analyze...
analysis of
data
from multiple...Relative Quantification and
Genotyping
experiments. Single
LDNe
free
21
Robin S. Waples and Chi Do
LDNe implements a bias correction for the estimation of contemporary effective population size (Ne) based on linkage...
disequilibrium
data
. The program reads
genotypic
data
...evaluation of
data
for highly polymorphic
Whichloci
free
6
Hatfield Marine Science Center, Oregon State University
A computer program for determining relative discriminatory power among candidate genetic...
requires
data
from populations under consideration listed either as
genotypes
WhichRun
free
2
Michael A. Banks, Will Eichert
WhichRun is a computer program for population assignment of individuals based on multilocus genotype...
based on multilocus
genotype
data
. WHICHRUN requires baseline
genotype
data
1
2
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