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Genotyping Data

Software
Geneious
rating
2,083
Biomatters Ltd.
Geneious is a research tool designed for biologists and not computer...
data. Powerful SNP detection and variant calling. Streamlined microsatellite genotyping
Bio-Rad CFX Manager
rating
1,587
Bio-Rad Laboratories, Inc.
Bio-Rad CFX Manager is a program designed for an intuitive experiment setup...
experiment setup and data...data analysis for gene expression and SNP genotyping
ChromasPro
rating
1,387
Technelysium Pty Ltd
ChromasPro is suitable for DNA sequence assembly projects up to a few megabases...
is able to assemble data from Sanger sequencers such
HaploView
free rating
763
Daly Lab
This program is designed to simplify and expedite the process of haplotype analysis by providing...
automatic download of phased genotype data from HapMap. * visualization
Flapjack
free rating
135
SCRI
New software tools for graphical genotyping and haplotype visualization are required...
graphical genotyping and haplotype...data volumes generated by high throughput SNP and comparable genotyping
TaqMan Genotyper Software
free rating
99
Life Technologies Corporation
TaqMan Genotyper Software is a free SNP genotyping...
a free SNP genotyping data...plates, and OpenArray Genotyping Plates. It gives
EcoStudy
free rating
99
Illumina
EcoStudy is a powerful data analysis component of Eco. EcoStudy enables you to analyze...
analysis of data from multiple...Relative Quantification and Genotyping experiments. Single
Breeding Management System
free rating
79
iPlant Collaborative
Breeding Management System is a suite of interconnected software specifically...
breeding plan development, data analysis, genotyping and breeding decision support
Genotyping Console
free rating
57
Affymetrix
Genotyping Console is available for analysis of Genome-Wide Human SNP Array...
Genotyping Console...nucleotide polymorphism (SNP) genotyping, indel detection, copy
DIVA-GIS Annapurna
free rating
27
International Potato Center (CIP)
DIVA-GIS can be used to map and analyze biological distribution data, such as can be provided...
Typically, the distribution data...species, phenotypes or genotypes
DETSEX
free rating
26
INRA
DETSEX is a program that implements a Bayesian model-based classifier to assign markers to their chromosome type...
of individuals from genotyping data. The DetSex...population(s) and the genotyping
LDNe
free rating
21
Robin S. Waples and Chi Do
LDNe implements a bias correction for the estimation of contemporary effective population size (Ne) based on linkage...
disequilibrium data. The program reads genotypic data...evaluation of data for highly polymorphic
Plink
free rating
19
Sputnik Games
PLINK is a free, open-source whole genome association analysis toolset, designed to perform a range...
on analysis of genotype/phenotype data ...generating genotype or CNV calls from raw data)
SPAGeDi
free rating
17
Olivier Hardy and Xavier Vekemans
SPAGeDi is a computer package primarily designed to characterize the spatial genetic...
mapped populations using genotype data of any ploidy...can also treat data without spatial
WhichRun
free rating
2
Michael A. Banks, Will Eichert
WhichRun is a computer program for population assignment of individuals based on multilocus genotype...
based on multilocus genotype data. WHICHRUN requires baseline genotype data